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In this research, a monitoring method using fatty acid profiles was evaluated for detecting changes in microbial community structures. For the evaluation, the operating parameters such as pH, plump butt organic loading, and chlorine addition were varied in two identical laboratory scale conventional activated sludge systems. A similarity plump butt index based on microbial fatty acid analysis was used to express the stability of microbial community structures in the systems. Experiments using a model microbial community showed that microbial compositions changed daily even under constant operating conditions and that the rate of change plump butt increased under dynamic operating conditions. Substrate changes brought about a relatively large change in a microbial community structure, eventually resulting in a very different microbial community.
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